My first reply was a bit rushed; so here goes a better one:
Starting off, with trying to explain why & how this leak occurs.
The PRHT deck seals, appear to come from factory with some sealant in them, which over time will dry up and under certain conditions, water will pass under the seal and eventually into the boot.
I say certain conditions, because this seems to happen more often to those of us that park our cars on a slope, when the cars are facing up-hill. This means that water collects over the seal instead of draining out the normal way, which is by the doors.
Here’s a photo of my car parked on my driveway. Because it’s on a slope, the back end is lower than the front, so water just sits there until it finds its way under the seal:
Tools & materials needed:
You’ll need some sealant for the seal, (I got some Dowsil DC785+ White Sanitary Silicone Sealant from Toolstation) and some black silicone/gasket maker, etc to join the end parts to the deck seal. A thin brush is useful for cleaning the groove in the seal. A blunt, small flathead screwdriver may help too, but be careful not to damage the seal. A long-nose pliers will be useful, as will some rags to clean the car body too.
The wire brush on this photo is what worked best at removing the old sealant, which can also be seen on there:
1- Lower your top and stop its operation before the deck lid goes back down.
Note the Micro-switch here:
Take a couple of photos of how the end parts attach over the seal and how they sit on the car’s body; this will help during refitting.
2- Pull away the lower ends of the 2 end parts from the car body, by pulling the 2 rubber plugs on them (Circled).
Note where sealant/glue has been applied to the inside of the end parts; that will need to be replaced.
3- Unclip the white plastic clip from the car body. I used long-nose pliers to get to the tangs on it from behind.
4- Once both end parts are free from the car, you can either separate them from the long seal, or remove them together with the seal as one piece, but note that these are just stuck on to the seal; then simply lift off the seal from the car body.
This is the mess I found under my seal and end parts:
5- Time to clean.
First get the seal in some hot water to soften the old sealant, (I got some washing-up liquid in there too):
Then clean off the car body and get it all dry.
Now remove as much of the old sealant from inside the seal as possible; dry it all up properly, then apply the new sealant to the seal.
I recommend applying the black silicone to the inside of the end parts, after refitting the seal.
Use the end parts as guidance on where the seal starts and ends, then lift the end parts again and apply the black silicone where it’s needed.
And finally refit the end parts by pushing those 2 rubber plugs back into the car body and the white clip on the inside too. Apply some pressure to where the black silicone was applied, to help it spread and stick properly, then get some paper tissue and stuff it between the end parts and the door, to keep pressure on there until the silicone dries up.
Good Luck. 