There’s a very useful thread about this here.
Since learning “the knack” I’ve got used to putting the roof down from outside (mine doesn’t go down cleanly without gently pushing the glass down as you do it anyway) and then, before clicking it down I go round to the back of the car and give the roof a few hefty pushes at the rear-most edge before clicking it down. This has stopped the roof rubbing up against the hoops for me, and since mine is also well out of warranty I think it’s what I’m going to live with.
That other thread also details how and where to put some gorilla tape to protect your roof, but with the new and improved way of putting the roof down I didn’t feel the need to do this on mine.
(That gorilla tape is good stuff though - fiound plenty of other uses for it 
)